Easy Small Batch Vegan Cookie Dough Cupcakes

Indulge in the ultimate treat with these soft, supremely decadent molten cookie dough cupcakes, perfectly crafted in a small batch to yield just six delightful portions. Each cupcake is a masterpiece, featuring a fluffy vanilla base generously stuffed with rich, edible cookie dough and crowned with a luscious cookie dough buttercream. This incredibly easy recipe is completely eggless and dairy-free, making it a dream come true for everyone, including those with dietary restrictions. Prepare to be amazed at how simple it is to create such a show-stopping dessert that’s also entirely vegan and can even be made gluten-free!

Decadent molten cookie dough cupcake with wrapper peeled off, revealing the delicious texture

Discover the Charm of Small-Batch Baking: Your Perfect Cupcake Solution

Lately, there’s been an undeniable charm in small-batch recipes, and for good reason! Whether you’re baking for a cozy evening, a small gathering, or simply want to satisfy a sweet craving without a mountain of leftovers, small batches are the answer. We’ve previously explored the joy of mini Biscoff cheesecakes, mini chocolate cheesecakes, small batch brown butter chocolate chip cookies, vegan chocolate cupcakes for two, and even adorable small chocolate and vanilla cakes.

But today, we’re taking small-batch perfection to a whole new level with a recipe that yields precisely six exquisite cupcakes. And what could possibly elevate a cupcake more than infusing it with irresistible cookie dough? It’s a culinary truth: edible chocolate chip cookie dough has the power to transform any dessert into an extraordinary experience. The sheer delight of these cupcakes even inspired a festive spin – our delightful sugar cookie dough stuffed cupcakes!

Prepare to be enchanted by these molten chocolate chip cookie dough cupcakes. Each features a light, airy, and incredibly easy vanilla cupcake batter that cleverly cradles a generous core of chilled, edible cookie dough. To top it all off, a cloud of fluffy cookie dough frosting completes this divine creation.

Close-up of a bitten cookie dough cupcake in its liner, showing the molten cookie dough center

The best part? You can achieve this baking marvel using just a whisk and a single large bowl for both the batter and the cookie dough. You’ll truly be astonished that these incredibly moist and flavorful cupcakes are completely eggless, dairy-free, and vegan. For our gluten-sensitive friends, this recipe is also wonderfully adaptable, working perfectly with the right gluten-free flour blend.

Whether you’re a devoted cookie dough enthusiast or a passionate cupcake connoisseur (having worked at Georgetown Cupcakes, I understand the passion!), this recipe is a game-changer. And for those who prefer an even grander indulgence, don’t miss our magnificent cookie dough CAKE!

Deconstructing the Deliciousness: The Core Components of Our Cookie Dough Cupcakes

Crafting these extraordinary cookie dough cupcakes involved a careful fusion of beloved recipes. We started with our foundational easy vegan vanilla cupcake recipe, thoughtfully scaling it down for a small batch and subtly tweaking it to complement the cookie dough elements. Next, our acclaimed edible cookie dough recipe was resized to perfectly fit these smaller treats. Finally, we integrated this irresistible cookie dough into our classic vegan buttercream frosting, resulting in the most velvety, rich, and utterly fluffy edible cookie dough frosting imaginable.

Here’s a closer look at the three star players in this delicious ensemble:

  • Fluffy Vanilla Cupcakes with Chocolate Chips: A tender, moist, and perfectly sweet vanilla cake base studded with mini chocolate chips, providing the ideal canvas for our molten surprise.
  • Irresistibly Edible Vegan Cookie Dough: A safe-to-eat, perfectly sweet, and delightfully chewy cookie dough that forms the molten core of each cupcake. You won’t believe it’s vegan!
  • Cloud-Like Dairy-Free Cookie Dough Frosting: A supremely light and airy buttercream, infused with real cookie dough, creating a frosting so good you’ll want to eat it by the spoonful (and honestly, that’s perfectly acceptable!).
A cookie dough cupcake sliced in half, showcasing the distinct layers of cupcake, molten cookie dough filling, and frosting.

Combining these elements into a manageable small batch of just six perfect cupcakes truly makes this my dream dessert. Let’s get baking!

An Essential Step: Heat-Treating Your Flour for Edible Cookie Dough

Before you dive into making the delicious edible cookie dough for these cupcakes, there’s a crucial step: heat-treating your flour. This process is essential for food safety, as raw flour can sometimes contain harmful bacteria. Whether you’re making these as gluten-free cookie dough cupcakes or traditional vegan cookie dough cupcakes, this step is non-negotiable for edible cookie dough.

Despite its importance, heat-treating flour is incredibly simple and adds minimal effort to your baking process. It ensures your cookie dough is safe to consume raw, allowing you to enjoy every spoonful without worry.

To safely heat-treat flour: Spread the desired amount of flour evenly onto a baking sheet lined with parchment paper. Preheat your oven to 350°F (175°C). Bake the flour for precisely 5 minutes. After baking, immediately transfer the flour to a clean bowl to cool completely. Once cooled, sift the flour thoroughly to remove any small clumps that may have formed during heating before incorporating it into your recipe.

Alternatively, you can also heat-treat flour in the microwave. Place the flour in a microwave-safe bowl and microwave on high for 30-second intervals, stirring well after each interval, until the flour reaches 160°F (71°C). This usually takes about 1 to 2 minutes. Always let it cool completely before use.

Visual Guide: Step-by-Step Instructions for Your Molten Cookie Dough Cupcakes

Let’s walk through the process of creating these delightful small-batch cookie dough cupcakes. Below, you’ll find a series of photos illustrating each key stage, from preparing the luscious cookie dough to frosting your finished cupcakes. For precise measurements and comprehensive written instructions, please refer to the detailed recipe card located at the bottom of this post.

Crafting the Edible Cookie Dough

Cookie dough mixture before chocolate chips are added, showing its smooth consistency.
Begin by preparing the edible cookie dough. The process is straightforward and mimics traditional cookie dough preparation, ensuring a perfect texture.
Chocolate chip cookie dough resting in a bowl after chocolate chips have been stirred in.
Fold in the mini chocolate chips until they are uniformly distributed throughout the dough. Once mixed, transfer the cookie dough to the refrigerator to chill while you proceed with the cupcake batter.

Baking Your Fluffy Cookie Dough Cupcakes

Wet ingredients for cupcakes whisked together in a mixing bowl until smooth and fully combined.
Next, turn your attention to the cupcake batter. Whisk together all the wet ingredients in a bowl until they are thoroughly combined and smooth.
Cupcake batter in a bowl, before chocolate chips are folded in, showing a creamy consistency.
Gently whisk in the dry ingredients, being careful not to overmix. Stop as soon as they are just incorporated to ensure a tender crumb.
Finished chocolate chip cupcake batter, ready to be scooped into liners.
Carefully fold in the remaining chocolate chips, distributing them evenly throughout the fluffy cupcake batter.
Cupcake liners filled with batter in a muffin tin, ready for baking.
Fill your cupcake liners about three-quarters full with the prepared batter, then bake them to golden perfection.
Freshly baked cupcakes in a muffin tin, golden brown and perfectly risen.
Once baked, remove the cupcakes from the oven and allow them to cool slightly in the muffin tin before transferring them to a wire rack to cool completely.
Cored chocolate chip cupcakes in a muffin tin, creating a cavity for the cookie dough filling.
Carefully core the top center of each cooled cupcake, creating a perfect pocket for the edible cookie dough filling.
Cupcakes stuffed with balls of edible cookie dough, ready for frosting.
Form the chilled cookie dough into tablespoon-sized balls and gently press one into the hollowed cavity of each cupcake, creating a delightful molten center.
Filled cookie dough cupcakes, waiting to be frosted.
Ensure the cupcakes are completely cool with their cookie dough fillings before proceeding to the frosting stage. This prevents melting and ensures a stable, beautiful finish.

Whipping Up the Dreamy Cookie Dough Frosting

Fluffy cookie dough frosting in a mixing bowl, showcasing its smooth and creamy texture.
Incorporate the reserved edible cookie dough into your prepared vegan buttercream, mixing until it’s fully blended and creates a deliciously textured frosting.
Six cookie dough cupcakes beautifully frosted and arranged, ready to be served.
Pipe or spread the luscious cookie dough frosting onto each cooled and filled cupcake. Garnish with extra mini chocolate chips or small cookie dough balls if desired for a finishing touch!

Tips for Baking the Best Molten Cookie Dough Cupcakes

  • Room Temperature Ingredients: Ensure your dairy-free milk, vegan butter, and vegan yogurt/sour cream are at room temperature. This helps all ingredients emulsify smoothly, resulting in a more uniform and tender cupcake batter.
  • Do Not Overmix: When combining wet and dry ingredients for the cupcakes, mix only until just combined. Overmixing develops gluten, leading to tough cupcakes. A few lumps are perfectly fine!
  • Accurate Flour Measurement: For consistent results, especially with gluten-free flours, use a kitchen scale to measure flour by weight (grams) rather than volume (cups).
  • Cool Completely: It’s crucial that your cupcakes are completely cool before coring, stuffing, and frosting. Warm cupcakes will melt the cookie dough and frosting, leading to a messy outcome.
  • Chill the Cookie Dough: Chilling the edible cookie dough not only makes it easier to handle for stuffing but also helps it hold its shape within the cupcake cavity.
  • Quality Vegan Butter: The quality of your vegan butter significantly impacts the flavor and texture of both the cupcakes and the buttercream. Choose a high-quality, unsalted vegan butter for the best results.

Customizing Your Cookie Dough Cupcakes: Variations & Add-ins

While these molten cookie dough cupcakes are perfect as is, feel free to get creative with variations!

  • Chocolate Chip Varieties: Experiment with different types of chocolate chips in your cookie dough and cupcake batter – dark chocolate, white chocolate, or even a mix can add new dimensions.
  • Nutty Additions: For an extra crunch and flavor, finely chop some walnuts or pecans and fold them into your edible cookie dough.
  • Spice It Up: A pinch of cinnamon or nutmeg in the vanilla cupcake batter can add a warm, comforting note, especially during cooler months.
  • Coffee Infusion: Add a teaspoon of instant espresso powder to the cupcake batter to enhance the chocolate flavor and add a subtle coffee kick.
  • Caramel Drizzle: A light drizzle of vegan caramel sauce over the frosted cupcakes before serving would be an exquisite addition.

Frequently Asked Questions About Vegan Cookie Dough Cupcakes

Can I make this cookie dough cupcake recipe gluten-free?

Absolutely! This recipe is incredibly adaptable for a gluten-free diet. My top recommendation is to use King Arthur Measure-for-Measure Gluten-Free Flour. This blend is designed to be a direct 1:1 substitute for all-purpose flour, both by weight and volume, simplifying the conversion process significantly.

Important Note for Gluten-Free Flour: If you opt for a gluten-free flour blend other than King Arthur, it is crucial to ensure that your chosen blend explicitly states it is a 1:1 all-purpose flour substitute and, critically, contains xanthan gum. Xanthan gum is vital for providing structure and elasticity in gluten-free baking. We’ve seen disappointing results when blends lacking xanthan gum are used, so please double-check your flour blend for this essential ingredient.

How long do these cookie dough cupcakes last, and how should I store them?

These vegan cookie dough cupcakes are best enjoyed fresh, but they can be stored in an airtight container at room temperature for up to 2-3 days, or in the refrigerator for up to 5 days. If refrigerating, allow them to come to room temperature for about 30 minutes before serving for the best texture and flavor. The cookie dough center will firm up slightly when cold, but will soften as it warms.

Why is heat-treating the flour necessary for edible cookie dough?

Heat-treating flour eliminates any potential harmful bacteria (like E. coli) that can sometimes be present in raw flour. Since this recipe features edible cookie dough that isn’t baked, this step is essential to ensure the cookie dough is safe to consume without cooking. It’s a simple, quick step that guarantees peace of mind!

Close-up of a perfectly baked and frosted cookie dough cupcake, partially bitten, on a marble surface.

You’re going to absolutely adore these easy and utterly delicious molten chocolate chip cookie dough cupcakes. They are truly a special treat, offering the perfect portion size for an intimate celebration, a bridal or baby shower, or simply to share a moment of joy with close friends and family. Their delightful flavor and unique molten center make them unforgettable.

Don’t forget to save this incredible recipe for later! Pin it to your favorite dessert board on Pinterest!

Pinterest pin for Small Batch Easy Molten Cookie Dough Cupcakes (No Eggs! No Dairy!)

If you try this recipe, please be sure to leave a comment and a rating ⭐️⭐️⭐️⭐️⭐️ below. Your feedback helps others discover and enjoy these recipes! As always, I absolutely love seeing your beautiful creations, so remember to tag me on Instagram and Pinterest!

Print Recipe

Bitten cookie dough cupcake in its liner, showcasing the molten center

Small Batch Easy Molten Cookie Dough Cupcakes (Vegan, Eggless, Dairy-Free, GF Option)


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  • Author: Britt Berlin
  • Prep Time: 20 minutes
  • Cooling time: 20 minutes
  • Cook Time: 18 minutes
  • Total Time: 58 minutes
  • Yield: 6 1x Cupcakes
  • Category: Dessert, Cupcakes
  • Method: Baking
  • Cuisine: American
  • Diet: Vegan, Egg-Free, Dairy-Free, Gluten-Free Option
Print Recipe

Description

These unbelievably soft and rich molten cookie dough cupcakes are a small-batch dream! Enjoy 6 perfectly portioned cupcakes, each with a fluffy vanilla base, a gooey edible cookie dough center, and crowned with a delightful cookie dough buttercream. They’re effortlessly easy to make, completely free of eggs and dairy, and offer a fantastic gluten-free option.


Ingredients


Scale

For the Small Batch Cupcakes:

  • 1 batch Vegan Edible Cookie Dough (prepared and chilled)
  • 1/4 cup (56 g) vegan unsalted butter, melted and cooled
  • 5 tbsp (86 g) granulated sugar
  • 1 tbsp (15 g) vegan yogurt or sour cream
  • 1/2 tbsp pure vanilla extract + 1/2 tsp vanilla powder or bean paste
  • 3/4 cup + 2 tbsp (110 g) all-purpose flour or gluten-free 1:1 baking flour*
  • 2 tsp cornstarch
  • 1/2 tsp baking powder
  • 1/4 tsp baking soda
  • 1/8 tsp sea salt
  • 7 tbsp (105 mL) dairy-free milk, at room temperature
  • 1/2 cup vegan mini chocolate chips

For the Vegan Cookie Dough Buttercream:

  • 1 batch Vegan Buttercream Frosting (prepared)
  • Remaining portion of prepared edible cookie dough
  • 1/4 cup vegan mini chocolate chips (optional, for extra chocolate in frosting)

Instructions

  1. Preparation: Preheat your oven to 350°F (175°C). Line a 6-cup cupcake pan with paper liners. Ensure the flour designated for the cookie dough is heat-treated for safety. If not already done, spread the cookie dough flour onto a parchment-lined baking sheet and bake for 5 minutes at 350°F (175°C). Remove from oven, let cool completely, then sift to eliminate any lumps before use.
  2. Craft the Cookie Dough: In a medium bowl, cream together the vegan butter and brown sugar until light and fluffy. Incorporate the dairy-free yogurt, vanilla extract, and sea salt, whisking until well combined. Switch to a silicone spatula, then fold in the cooled, sifted heat-treated flour and cornstarch until just mixed. Stir in the mini chocolate chips until evenly distributed.
  3. Chill the Cookie Dough: Place the prepared cookie dough in the refrigerator to firm up while you prepare the cupcake batter. This makes it easier to handle.
  4. Prepare the Cupcake Batter: In a separate bowl, whisk together the melted vegan butter, granulated sugar, dairy-free yogurt, and vanilla extract until smooth. Add the all-purpose (or gluten-free) flour, cornstarch, baking powder, baking soda, and sea salt. Gently whisk until just combined, gradually adding the room-temperature dairy-free milk. Fold in the vegan mini chocolate chips evenly.
  5. Bake the Cupcakes: Divide the batter evenly among the 6 cupcake liners, filling each approximately three-quarters full. Bake for 15-18 minutes, or until a toothpick inserted into the center of a cupcake comes out clean. Let the cupcakes cool in the pan for 5-10 minutes before carefully transferring them to a wire rack to cool completely.
  6. Form Cookie Dough Balls: While the cupcakes cool, retrieve the chilled cookie dough from the fridge. Scoop the cookie dough into six 1-tablespoon sized balls for the cupcake centers. If you desire additional cookie dough balls for decoration on top, prepare extra at this stage.
  7. Stuff the Cupcakes: Once the cupcakes are fully cooled, use a butter knife or a small spoon to carefully hollow out a small hole in the center of each cupcake. Gently press one 1-tablespoon cookie dough ball into each cavity. It’s perfectly fine if the cookie dough peeks out slightly. Ensure the stuffed cupcakes cool completely before moving on to frosting.
  8. Make the Cookie Dough Frosting: Prepare your vegan buttercream frosting according to your chosen recipe (using either a stand mixer or hand mixer). Once smooth and creamy, add the remaining room-temperature edible cookie dough to the buttercream. Mix on low speed until the cookie dough is fully incorporated, creating a delicious cookie dough-flavored frosting.
  9. Frost and Serve: Pipe or spread the delightful cookie dough frosting onto each cooled, stuffed cupcake as desired. For an extra touch, garnish with additional mini chocolate chips or small cookie dough balls. Serve and enjoy your molten cookie dough masterpieces!

Notes

Gluten-Free Option: For best results, use King Arthur Measure-for-Measure Gluten-Free Flour or a certified 1:1 gluten-free baking blend that contains xanthan gum. Refer to the “Can I make this cookie dough cupcake recipe gluten-free?” section above for full details.

For more detailed insights and visual aids, please read the entire blog post above!

Did you make this recipe?

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